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	<title>gnTEAM &#187; Search Results  &#187;  &#8220;Text Analytics&#8221;</title>
	<atom:link href="http://gnteam.cs.manchester.ac.uk/search/%22Text+Analytics%22/feed/rss2" rel="self" type="application/rss+xml" />
	<link>http://gnteam.cs.manchester.ac.uk</link>
	<description>Text extraction, analytics, mining</description>
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		<title>Governance for healthcare text analytics</title>
		<link>http://gnteam.cs.manchester.ac.uk/governance-healthcare-text-analytics/</link>
		<comments>http://gnteam.cs.manchester.ac.uk/governance-healthcare-text-analytics/#comments</comments>
		<pubDate>Fri, 17 Jul 2020 14:08:25 +0000</pubDate>
		<dc:creator><![CDATA[gnenadic]]></dc:creator>
				<category><![CDATA[News]]></category>

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		<description><![CDATA[<p>New publications on governanace for healthcare text analytics: Ford E, Oswald M, Hassan L, Bozentko K, Nenadic G, Cassell J: Should free-text data in electronic medical records be shared for research? A citizens’ jury study in the UK. Journal of Medical Ethics 2020;46:367-377 (link) Jones KH, Ford EM, Lea N,&#8230; </p>
<p>The post <a rel="nofollow" href="http://gnteam.cs.manchester.ac.uk/governance-healthcare-text-analytics/">Governance for healthcare text analytics</a> appeared first on <a rel="nofollow" href="http://gnteam.cs.manchester.ac.uk">gnTEAM</a>.</p>
]]></description>
				<content:encoded><![CDATA[<p>New publications on governanace for healthcare text analytics:</p>
<ul>
<li>Ford E, Oswald M, Hassan L, Bozentko K, Nenadic G, Cassell J: <strong>Should free-text data in electronic medical records be shared for research? A citizens’ jury study in the UK</strong>. Journal of Medical Ethics 2020;46:367-377 (<a href="https://jme.bmj.com/content/46/6/367">link</a>)
<li>Jones KH, Ford EM, Lea N, Griffiths L, Hassan L, Heys S, Squires E, Nenadic G: <strong>Towards the development of data governance standards for using clinical free-text data in health research: a position paper</strong>. Journal of Medical Internet Research. 23/03/2020:16760, DOI: 10.2196/16760 (<a href="https://preprints.jmir.org/preprint/16760">link</a>)
</ul>
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		<title>Dr Maksim Belousov</title>
		<link>http://gnteam.cs.manchester.ac.uk/staff/mbelousov/</link>
		<comments>http://gnteam.cs.manchester.ac.uk/staff/mbelousov/#comments</comments>
		<pubDate>Mon, 10 Oct 2016 16:22:26 +0000</pubDate>
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]]></description>
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		<title>DOSES</title>
		<link>http://gnteam.cs.manchester.ac.uk/resources/doses/</link>
		<comments>http://gnteam.cs.manchester.ac.uk/resources/doses/#comments</comments>
		<pubDate>Sun, 17 Jan 2016 12:39:50 +0000</pubDate>
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		<description><![CDATA[<p>DOSES DOSES (DOSage Extraction System) extracts and represents free-text medication prescription instruction information in a structured form. In particular, it represents the variability and flexibility in drug directions by including minimum and maximum values for drug dosage, frequency and interval of administration, as well as optional choices. In order to comprehensively&#8230; </p>
<p>The post <a rel="nofollow" href="http://gnteam.cs.manchester.ac.uk/resources/doses/">DOSES</a> appeared first on <a rel="nofollow" href="http://gnteam.cs.manchester.ac.uk">gnTEAM</a>.</p>
]]></description>
				<content:encoded><![CDATA[<h2>DOSES</h2>
<p>DOSES (DOSage Extraction System) extracts and represents free-text medication prescription instruction information in a structured form. In particular, it represents the variability and flexibility in drug directions by including minimum and maximum values for drug <em>dosage, frequency</em> and <em>interval</em> of administration, as well as optional <em>choices.</em> In order to comprehensively represent the information in medication prescriptions, DOSES identifies and represents in structure the following medication prescription dosage attributes:</p>
<ul>
<li>min/max dose number</li>
<li>min/max dose frequency</li>
<li>min/max dose interval</li>
<li>dose unit</li>
<li>optional dose</li>
</ul>
<p>DOSES is implemented in <a href="http://minorthird.sourceforge.net/">MinorThird</a> for the identification of the targeted dosage attributes, and Python for result post-processing and structured representation.</p>
<p>Currently, two versions are available for DOSES:</p>
<p>In DOSES v.1, the performance has been evaluated on a subset of CPRD (Clinical Practice Research Database) prescription records.</p>
<p>More details on the architecture and the performance can be found in.</p>
<ul>
<li>
<p class="p1"><a href="http://gnteam.cs.manchester.ac.uk/publication/295950-modelling/" target="_blank"><span class="s1">Karystianis, George, et al. &#8220;Modelling and extraction of variability in free-text medication prescriptions from an anonymised primary care electronic medical record research database.&#8221; <i>BMC medical informatics and decision making</i> 16.1 (2016): 1.</span></a></p>
</li>
</ul>
<p>DOSES v.2 has been tailored and evaluated on a collection of patient records acquired from the UK Renal Registry (UKRR).</p>
<p>More details on the tailored version can be found in.</p>
<ul>
<li>
<p class="p1"><span class="s1">Alfattni, Ghada, et al. &#8220;Integrating text analytics and statistical modelling to analyse the UK Renal Registry data.&#8221; Poster presented at: International Population Data Linkage Conference; 2016 AUGUST 24-26; Swansea, United Kingdom</span>.</p>
</li>
</ul>
<p>Contact George Christopher Karystianis, (<a href="mailto:karystianis@gmail.com">karystianis@gmail</a>) regarding any questions, bugs and/or suggestions.</p>
<p><img class=" alignright" src="http://gnteam.cs.manchester.ac.uk/old/tools/CPRD/main-logo-no-caption.gif" alt="" width="187" height="88" /></p>
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		<item>
		<title>Text Analytics and Sentiment Analysis in Healthcare Web 2.0</title>
		<link>http://gnteam.cs.manchester.ac.uk/project/text-analytics-and-sentiment-analysis-in-healthcare-web-2-0/</link>
		<comments>http://gnteam.cs.manchester.ac.uk/project/text-analytics-and-sentiment-analysis-in-healthcare-web-2-0/#comments</comments>
		<pubDate>Fri, 26 Jun 2015 14:19:52 +0000</pubDate>
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		<guid isPermaLink="false">http://gnode.dev/?post_type=project&#038;p=275</guid>
		<description><![CDATA[<p>Sentiment analysis is a field in computational linguistics involving identification, extraction and classification of opinions and emotions expressed in natural language. The capture and analysis of such attitudes and opinions in an automated and structured fashion might offer a powerful technology to a number of problem domains, including business intelligence,&#8230; </p>
<p>The post <a rel="nofollow" href="http://gnteam.cs.manchester.ac.uk/project/text-analytics-and-sentiment-analysis-in-healthcare-web-2-0/">Text Analytics and Sentiment Analysis in Healthcare Web 2.0</a> appeared first on <a rel="nofollow" href="http://gnteam.cs.manchester.ac.uk">gnTEAM</a>.</p>
]]></description>
				<content:encoded><![CDATA[<p>Sentiment analysis is a field in computational linguistics involving identification, extraction and classification of opinions and emotions expressed in natural language. The capture and analysis of such attitudes and opinions in an automated and structured fashion might offer a powerful technology to a number of problem domains, including business intelligence, marketing, national security, and crime prevention and biomedical. This is part of Rosyzie&#8217;s and Azad&#8217;s PhD projects.</p>
<p>The post <a rel="nofollow" href="http://gnteam.cs.manchester.ac.uk/project/text-analytics-and-sentiment-analysis-in-healthcare-web-2-0/">Text Analytics and Sentiment Analysis in Healthcare Web 2.0</a> appeared first on <a rel="nofollow" href="http://gnteam.cs.manchester.ac.uk">gnTEAM</a>.</p>
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		<title>Dr Rosyzie Anna Apong</title>
		<link>http://gnteam.cs.manchester.ac.uk/staff/rapong/</link>
		<comments>http://gnteam.cs.manchester.ac.uk/staff/rapong/#comments</comments>
		<pubDate>Thu, 25 Jun 2015 09:49:40 +0000</pubDate>
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		<title>Prof Goran Nenadic</title>
		<link>http://gnteam.cs.manchester.ac.uk/staff/gnenadic/</link>
		<comments>http://gnteam.cs.manchester.ac.uk/staff/gnenadic/#comments</comments>
		<pubDate>Wed, 24 Jun 2015 15:02:20 +0000</pubDate>
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		<description><![CDATA[<p>Prof Goran Nenadic is Professor in the School of Computer Science, University of Manchester, a group leader in the Manchester Institute of Biotechnology (MIB) and Health eResearch Centre (HeRC).</p>
<p>The post <a rel="nofollow" href="http://gnteam.cs.manchester.ac.uk/staff/gnenadic/">Prof Goran Nenadic</a> appeared first on <a rel="nofollow" href="http://gnteam.cs.manchester.ac.uk">gnTEAM</a>.</p>
]]></description>
				<content:encoded><![CDATA[<p>Prof Goran Nenadic is Professor in the School of Computer Science, University of Manchester, a group leader in the Manchester Institute of Biotechnology (MIB) and Health eResearch Centre (HeRC).</p>
<p>The post <a rel="nofollow" href="http://gnteam.cs.manchester.ac.uk/staff/gnenadic/">Prof Goran Nenadic</a> appeared first on <a rel="nofollow" href="http://gnteam.cs.manchester.ac.uk">gnTEAM</a>.</p>
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		<title>Information for prospective postgraduate students</title>
		<link>http://gnteam.cs.manchester.ac.uk/contact/prospective-postgraduates/</link>
		<comments>http://gnteam.cs.manchester.ac.uk/contact/prospective-postgraduates/#comments</comments>
		<pubDate>Mon, 22 Jun 2015 12:21:04 +0000</pubDate>
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				<content:encoded><![CDATA[<div class="osc-res-tab tabbable   osc-tabs-left"><div style="clear:both;width: 100%;"><ul class="nav osc-res-nav nav-pills osc-tabs-left-ul" id="oscitas-restabs-1-prospective-postgraduates-93947"><li class="active"><a href="./#general-information" data-toggle="tab">General information</a></li><li class=""><a href="./#themes" data-toggle="tab">Themes</a></li><li class=""><a href="./#application-steps" data-toggle="tab">Application steps</a></li><li class=""><a href="./#funding" data-toggle="tab">Funding</a></li><li class=""><a href="./#environment" data-toggle="tab">Environment</a></li></ul></div><div style="clear:both;width: 100%;"><ul class="tab-content" id="oscitas-restabcontent-1-prospective-postgraduates-93947"><li class="tab-pane active" id="general-information"></p>
<h3>General information</h3>
<p>We are always keen to have postgraduate research students in various areas of text mining and natural language processing. As a rule of thumb, you will need to have an xmaplesxcellent first degree in computer science or related area (e.g. computational lingustics, mathematics, physics, bioinformatics), with very good programming experience and some experience in natural language processing (e.g. final year project, summer internship, an ad-hoc project). An MSc or publications in a related area will be also a distinctive advanatage <a href="https://writing-help.org/blog/domestic-terrorism-essay" style="text-decoration: none; color: inherit;">try terrorism essay for free</a>.</p>
<p>The main theme of our research is <strong>feature engineering</strong> from unstructured documents written in natural languages. We investigate methodologies for the extraction of both explicit and implicit features from large collections of textual documents. Features can be terms, names, relations, co-occurances, events, etc. Once engineered from text, the features can be used to provide understanding and reasoning over knowledge (e.g. by applying machine learning or data mining) &#8211; this discipline is referred to as text analytics, text mining or more generally natural language processing (NLP).</p>
<p></li><li class="tab-pane " id="themes"></p>
<h3>Themes</h3>
<p>Here are some core <strong>text mining themes</strong> (please see below for details) that are currently the focus in our TEAM:</p>
<ul>
<li><strong>Text analytics and sentiment analysis</strong>: identification of subjective opinion and sentiment features from user-generated content (e.g. blog mining, tweets, etc.);</li>
<li><strong>Extracting negations, contrasts and contradictions</strong>: identification of utterances that are negated, or contrast or contradict some other expressions (both explicit and implicit);</li>
<li><strong>Concept mining and structuring</strong>: learning and identification of concepts and terminology from text, including their structuring (internal and external);</li>
<li><strong>Temporal text analytics</strong>: identification of temporal expressions and their scope in text;</li>
<li><strong>Integrated text and data mining</strong>: combining the results from different perspectives using various methods from machine learning;</li>
<li><strong>Text processing midleware for the Semantic Web</strong>: building an infrastructure to support building text mining solutions for the Semantic Web (identification of concepts, links, etc);</li>
</ul>
<p>and these are preferred <strong>application areas</strong>:</p>
<ul>
<li>Biology and biomedicine (molecular interactions, cancer studies, characterisation of molecular events, etc.)</li>
<li>Bioinformatics and computational biology (tools, services, resources, methods)</li>
<li>Clinical medicine and health-care (clinical decision support, quality of life monitoring)</li>
<li>E-science, e-commerce and e-government (e.g. monitoring, tracking, dissemination of information)</li>
<li>Engineering (knowledge management)</li>
</ul>
<p>You would typically &#8216;select&#8217; a topic that consist of a particular theme in a specific application area. I&#8217;d be also happy to consider proposals in the areas of <strong>multi-lingual text mining</strong> and <strong>NLP for Serbian</strong>.</p>
<p></li><li class="tab-pane " id="application-steps"></p>
<h3>Application steps</h3>
<p>You will be expected to have passion for text processing, in addition to an excellent first degree in computer science or related area. Some experience in natural language processing is very useful, whereas very good programming experience (in a combination of programming languages) is a must. If you belive you&#8217;ve got all these, send an email to Goran Nenadic (see below) with a full CV and a brief note as why you would like to do PhD in our TEAM. Please allow some time for us to reply. Contact email: <a href="mailto:G.Nenadic@manchester.ac.uk">G.Nenadic@manchester.ac.uk</a>.</p>
<p></li><li class="tab-pane " id="funding"></p>
<h3>Funding</h3>
<p>PhD studies are between 3 and 4 years, typically closer to 4 than to 3 years. There is only one route for securing funding: the candidate needs to be outstanding. There are 3 possible sources of funding:</p>
<ul>
<li>specific, pre-defined projects (NONE CURRENTLY),</li>
<li>funding from the School of Computer Science (see <a href="http://cdt.cs.manchester.ac.uk/" target="_blank">here</a> for details) and</li>
<li>external funding (private, external bodies &#8211; e.g. foreign governments, etc).</li>
</ul>
<p></li><li class="tab-pane " id="environment"></p>
<h3>Environment</h3>
<p>The School of Computer Science is one of the leading Schools in the UK reknown for the excellence of its research. The world&#8217;s first computer with internal memory was build in the School and Alan Turing has laid the foundations of Computer Science and Artificial intelligence while in Manchester. The international reputation of our research reflects on its high ranking in the last national Research Assessment Exercise (RAE), which places the School among the best five Computer Science departments in the UK and top in England for research power. The School has a vibrant research environment with more than 150 PhD students, 90 research staff and 70 academic staff.</p>
<p>Our research <a href="http://gnode.dev/people/">TEAM</a> is part of the Text Mining/NLP research group, which hosts the UK National Centre for Text Mining. We are also affiliated to <a href="http://www.mib.ac.uk/" target="_blank">the Manchester Interdisciplinary BioCentre</a>. The team is vibrant, diverse and very much international.</p>
<p></li></ul></div></div>
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		<title>Training</title>
		<link>http://gnteam.cs.manchester.ac.uk/training/</link>
		<comments>http://gnteam.cs.manchester.ac.uk/training/#comments</comments>
		<pubDate>Mon, 22 Jun 2015 12:04:38 +0000</pubDate>
		<dc:creator><![CDATA[admin]]></dc:creator>
		
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		<description><![CDATA[<p>gnTEAM provides traninig in topics related to text mining for undergraduate (BSc final year projects) and postgraudate students (MSc, MPhil, PhD and EngD projects). Final year undergraduate and MSc projects associated with the team are announced annually as part of the School of Computer Science taught programmes. The current research post-graduate&#8230; </p>
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]]></description>
				<content:encoded><![CDATA[<p>gnTEAM provides traninig in topics related to text mining for undergraduate (BSc final year projects) and postgraudate students (MSc, MPhil, PhD and EngD projects).<br />
Final year undergraduate and MSc projects associated with the team are announced annually as part of the School of Computer Science taught programmes.</p>
<p>The current <strong>research post-graduate themes</strong> include:</p>
<ul>
<li>Integrated and Contrastive Text and Data Mining</li>
<li>Text Analytics and Blog/Forum Sentiment Analysis</li>
<li>Extracting negations, contrasts and contradiction from biomedical literature</li>
<li>Clinical text mining</li>
<li>Text mining in engineering</li>
</ul>
<p>More specific post-graduate information is available <a href="http://gnode.dev/contact/prospective-postgraduates/">here</a>. For PhD funding opportunities see <a href="http://www.cs.manchester.ac.uk/study/postgraduate-research/programmes/cdt/" target="_blank">CDT in Computer Science</a>.</p>
<h2>Selected completed student projects</h2>
<div class="table-responsive"><table  style="width:100%; "  class="easy-table easy-table-default " border="0">
<thead>
<tr><th >Student Name</th>
<th >Project Title</th>
<th >Year</th>
</tr>
</thead>
<tbody>
<tr><td >E. Hein</td>
<td > EDViC: a web application to visualise and explore epidemiological literature (BSc project)</td>
<td > 2013</td>
</tr>

<tr><td >T. Patel</td>
<td > Analysing Twitter Posts to Discover and Review New Software Tools (BSc project)</td>
<td > 2012</td>
</tr>

<tr><td >B. Dumitru</td>
<td > Mining twitter data to gather information about pharmaceutical drugs (BSc project)</td>
<td > 2012</td>
</tr>

<tr><td >I. Townend</td>
<td > Mapping of Clinical Data between Heterogeneous Terminologies and Classifications (MSc project)</td>
<td > 2011</td>
</tr>

<tr><td >S. Asif</td>
<td > An Analysis of Financial Blogs and Forums (MSc project)</td>
<td > 2010</td>
</tr>

<tr><td >A. Dehghan</td>
<td > A Rule-based Approach to External Context Extraction from Biomedical Literature: URL and Role Extraction (MSc project)</td>
<td > 2010</td>
</tr>

<tr><td >A. Tsoutsoumpi</td>
<td > A question answering system from FAQ pages (MSc project)</td>
<td > 2010</td>
</tr>

<tr><td >D. Yang</td>
<td > Extending Areca with Remote Backup Features (BSc project)</td>
<td > 2010</td>
</tr>

<tr><td >S. Latif</td>
<td >Automatic Summarisation As Pre-Processing For Document Clustering (PhD project)</td>
<td > 2010</td>
</tr>

<tr><td >M. Greenwood</td>
<td >Prioritising links for Topic-focused Web Crawling using Lexical and Terminological Profiling (MPhil project)</td>
<td > 2009</td>
</tr>

<tr><td >H. Afzal</td>
<td >A Literature-Based Framework for Semantic Descriptions of E-Science Resources (PhD project)</td>
<td > 2009</td>
</tr>
</tbody></table></div>
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