Dr Geraint Duck
PhD student (now with Singenta)
Biography
My PhD research aimed to describe the generic systems used within the biological computational research field. By recognising and extracting the resources (databases and software names) used within journal articles, I was able to provide a proxy for the abstract in silico method used within each paper. By performing this extraction on a large scale (full PubMed Central corpus), I could provide an overview of the methods and resources used within the domain. This research potetially has wider implications in community "best" and "common" practice.Publications
- Ambiguity and variability of database and software names in bioinformatics
Journal of Biomedical Semantics. BioMed Central Ltd.; 2015
- bioNerDS: exploring bioinformatics’ database and software use through literature mining
B M C Bioinformatics. BioMed Central Ltd.; 2013
- Extracting patterns of database and software usage from the bioinformatics literature
Bioinformatics. Oxford University Press; 2014
- Extracting patterns of database and software usage from the bioinformatics literature
Bioinformatics. Oxford University Press; 2014
- bioNerDS: exploring bioinformatics’ database and software use through literature mining
BMC Bioinformatics; 2013
Projects
No projects available.