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Pre-processingTools

Sentence splitting (Aleksandar & Azad)

• Genia Sentence Splitter
• cTAKES

Please put here the references to tools that you have used to accomplish this task in clinical domain. You can also put tools that could be re-adapt for clinical domain.

Tokenisation + POS-tagging (Azad & Michele)

• Genia Tagger
• GATE
• OpenNLP (cTAKES)

Please put here the references to tools that you have used to accomplish this task in clinical domain. You can also put tools that could be re-adapt for clinical domain.

Chunking (Azad & Michele)

• OpenNLP (cTAKES)

Please put here the references to tools that you have used to accomplish this task in clinical domain. You can also put tools that could be re-adapt for clinical domain.

Concept recognition (all)

• 2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text
  • Get reference from: Perspective paper
    • See in particular: D'Avolio et al. 2011; Patrick et al. 2011; Jiang et al. 2011; Halgrim et al. (2010); Gurulingappa et al. 2010

Please put here the references to tools that you have used to accomplish this task in clinical domain. You can also put tools that could be re-adapt for clinical domain.

Negation (Aleksandar)

• NegEx
• Aleksandar's tool

Please put here the references to tools that you have used to accomplish this task in clinical domain. You can also put tools that could be re-adapt for clinical domain.